rs39245431 SNP Detail

Summary

• ID
  rs39245431
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:121069127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCACACGG CCTCGGGTCC
  TGCTACCCCA TTCCCCGGCT CTCAGAAGGA AACGTCTCCA AGCTGGTCTT ACTCACAGGC
  TTCACTCCAC TGCATATGCA AAACTTGCTA AGAGACTAAG TGTTCTTGTG AAGAAGGAAA
  AAAAAGGAGG TATGTGAGGT GACAAATATG CTAACTAACT TGGAATCATC ATCTCACAAC
  W
  TGCAGTTTGT CCTGTACATT GTAAGAAAGC TTGGGGGAAA TACGCTAGAT TAAAAGGGGC
  ATTCATAGTA CTGATATTTG ACAAAGCCAC TTAGATACGC TTTTCTCGAA CGAGTCCTAA
  GGCGTGCCAC TTGTTCCTGA ACAGTGTGTG TGCATTACAA CAATCCAGTT TGACACTCCC
  TGAGTTCTGT ATCTTATTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51569584	NES14614178	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39245431					SNP	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51569584	NES14614178	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:121069127 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6879	CpG island 6879	207 bp proximal
Rr287003	regulatory region 287003	within coordinates
Rr390218	regulatory region 390218	347 bp upstream
Rr404289	regulatory region 404289	85 bp upstream