rs39245665 SNP Detail

Summary

• ID
  rs39245665
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109595694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAATGGAA CCCACAGGCT
  TAAATCCTTT AATAGACTGA CTCATGAGAG ATTGGGTGAC TAATCCTAAC TTGGTTGCTA
  TTACATTCCC ATTATTGACT CCCGAATAAC TCTCTTTCTT ATGTAATGAC TTATGTACTC
  TTTAATTTTT AATACAACAG AAACTAAAAT CTCCCACCCC ACACAAGAGA AATAAATGCA
  R
  CCATTAAGAC TGTCTGTGCT GCTACCCACA GACACCCTCA TCTCATTTAT CTTTTTCAAG
  GGACCTCGCT GTGCATTGTT GAGGGTCTAC CTTGCAACAG CGATCTCAGG TCCCCTAATT
  TACACATTCG CTGACTGGCT CATTATCTTT ATTCTGTAGG TAGCTTATTT ATTCCTAAAT
  TACACCCTGG GAATAGATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51054045	NES14376518	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39245665					SNP	G	G	G	G	G	G	G	G	G	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51054045	NES14376518	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109595694 () rs orientation: forward

Symbol	Name	Function Class
Gm24564	predicted gene, 24564	1814 bp upstream
Rian	RNA imprinted and accumulated in nucleus	within coordinates
Tssr115150	transcription start site region 115150	177 bp downstream
Tssr115151	transcription start site region 115151	833 bp upstream