rs39248360 SNP Detail

Summary

• ID
  rs39248360
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47448879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATGAAGC ATCAGGCTCC
  CTGGAGAGCA TGCCTGTTAG CATCCGGCAC CATGGAAGTA GCTGCTGACA CTGGCTCTTA
  TTAGCATTCC CTAGAGTCCT GTGGAGGATC AGAGCATTCA CGACTGGTAT TTGTCTGAAA
  TAAACACTCA GGGAAGGAAA TGACCGTGAA AGCAAAACAC CTCCCAAATC CAAACAGACA
  W
  GATGTCTCCT TTGCTTCAGA TAAACAAGCG TCTCCCCGCC ACCATATGGC TCCAAACACA
  CCTATACACA CCTGTGCGCG CAAAGAAGTC TGCTTTCCAA CTTACACCGG CAAGCCCTCC
  GACGGAGGTG GCTATGGTTT GCATCTGGCA TCTGCAGAGC CATCTTAAAG AAACAGGGTC
  TGAGGCCAAC GCCCGTTTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50859962	NES13511552	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39248360					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50859962	NES13511552	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47448879 () rs orientation: forward

Symbol	Name	Function Class
Gm52384	predicted gene, 52384	717 bp downstream
Rr549060	regulatory region 549060	1204 bp distal
Rr549061	regulatory region 549061	within coordinates
Rr549062	regulatory region 549062	393 bp proximal
Rr549063	regulatory region 549063	1001 bp proximal
Rr549064	regulatory region 549064	1590 bp proximal
Sh3pxd2a	SH3 and PX domains 2A	within coordinates
Tssr159729	transcription start site region 159729	168 bp downstream
Tssr159730	transcription start site region 159730	318 bp downstream