rs39249566 SNP Detail

Summary

• ID
  rs39249566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86413491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTCAAAT GGCACATAGG AGATCACTGA AACTACAGCA
  AGCCTTACAG TGTCTGTCAA GTCATAGTTT AGGTTTATCC TAGAATCCCA TCTCCATTCT
  Y
  CTGCAAACCC TTCAGTGCCA CACTGACTTG TTTCTAAATG AACAATTATT AGGGTGGAGA
  CAGATCAAAG GTTGATATTG GGGCTGGAGT GGTAGCTCAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51753298	NES14806764	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39249566					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51753298	NES14806764	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86413491 () rs orientation: forward

Symbol	Name	Function Class
C87436	expressed sequence C87436	1865 bp upstream
Cpgi17664	CpG island 17664	1581 bp proximal
Gm44790	predicted gene 44790	within coordinates
Gm66311	predicted gene, 66311	974 bp downstream
Rr399735	regulatory region 399735	1678 bp upstream
Tssr57468	transcription start site region 57468	1851 bp upstream
Tssr57469	transcription start site region 57469	1906 bp upstream