rs39252115 SNP Detail

Summary

• ID
  rs39252115
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:77386258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCAGACT CCTCCTAACA
  CGAATAACAA ATCACAGATG CAGTCCCAGA GACCCTGGTG ATAACATGAG ACTCCCAGCA
  CCCACATCAG CCTGCAGGGC AGTCCTCACC CTGATCCTCA TGGCAGAGGG CCTCACACAG
  CCTTCTCCAT CCACCACACA GTCTCTTTGA GTGCCTGCTC TGCCTGCAAT GACCTTGTCA
  K
  AGCCCCAGGC CATCCCTGCA CACTCATTGC CTTCCCAAAA GTACCATAAA GGATTTTTTT
  TTTTTGAGCT CAGACTGCAG GGACTATCTG GAACCCACTG ATTTGGAGTT GGTAGCAGAT
  AGAATAAGGG GGTCCTGACT CTGGTATCTT GTGTCCAATA GCCCCCCCCC AAAGTTGAAT
  ATCGTGTCCT TCTGCTATAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50884845	NES14161841	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39252115					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50884845	NES14161841	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77386258 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Itgb2	integrin beta 2			Intron
				Noncoding-Transcript-Variant
Tssr94240	transcription start site region 94240			1857 bp downstream
Tssr94241	transcription start site region 94241			1788 bp downstream
Tssr94242	transcription start site region 94242			774 bp downstream
Tssr94243	transcription start site region 94243			64 bp upstream
Tssr94244	transcription start site region 94244			461 bp upstream