rs39253210 SNP Detail

Summary

• ID
  rs39253210
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92421665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCAGAGTT ACACAATCAT
  TAGCAGGTTG CTGTGTCTCT GAGCACAGCA TGCTGGGAAT GTGTGGAAAA CAGGCAGAGT
  TTCATGGCCC TTCCGTCAAG GAATGTTGGA GTTGAGAATA AAGATAGTGC AGATATCTTG
  CACCTTGACT ATGCTATCTA TGAGGGGTAA ATTATGCATC TGGTCTGTGG ACTAAAGGCC
  Y
  TATGTACTGG GTTACATTAC AAAATGAATG GACTTCTGGT TGTCTTTTTT GGACTTTCTT
  CAACCTCACC TACTCAGTTT TTTCTGAACA CTCTTCCTGT AACCAAGGCT GACATTTGGG
  AGGAACCCAA ATGATGACAA TGATTGCTAT ACAAACTTTC TTTTTCTTTA GAGGTTATAT
  ATATATTATT ACTGGACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss52036460	NES15053639	PERLEGEN	MM_PANEL2	f	SNP	C	C	C		T	T
ss323074131	CHEV_9_92434450	CHEVERUD	SCREENING_POP	f	SNP				T			C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs39253210					SNP	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52036460	NES15053639	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92421665 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Gm37545	predicted gene, 37545	324 bp downstream
Rr684631	regulatory region 684631	988 bp distal