rs39265891 SNP Detail

Summary

• ID
  rs39265891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95900461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTT GGAGGAGCAT ATAGTACCTA
  Y
  TGGCTTCTAA AAACATTTTA TTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss51137181	NES14339039	PERLEGEN	MM_PANEL2	f	SNP			T	C		T		T	C
ss144993662	ENSMUSSNP6043236	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			C
ss324489705	CHEV_13_96533908	CHEVERUD	SCREENING_POP	f	SNP							C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs39265891					SNP	C	C	T	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51137181	NES14339039	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95900461 () rs orientation: forward

Symbol	Name	Function Class
Gm32702	predicted gene, 32702	1135 bp upstream
Iqgap2	IQ motif containing GTPase activating protein 2	within coordinates
Rr484141	regulatory region 484141	within coordinates
Rr484142	regulatory region 484142	733 bp proximal
Rr484143	regulatory region 484143	1149 bp proximal
Tssr120725	transcription start site region 120725	1168 bp upstream
Tssr120726	transcription start site region 120726	1372 bp upstream