rs39268004 SNP Detail

Summary

• ID
  rs39268004
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:26387796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAGCTGG AGTCTCAACA
  CAACTAGATC TACCCTCCTG CCGGGCGGTC CTGCTCACCA GCTCCGGCTC ACTACTCCTG
  ACAGCCTTGT AGCACAGCAT CACTTCCCCC AGGTCGGGGG GGGGGGGGGG AGCCTCCACA
  GCAGCCGCCT AGGTGCTGGT GGCGGCCCCC TCCCTTTACT AAGTTCCGCC TTCTCTGGTC
  S
  CTCCAACCCG CGGTAGCCCG AACACCCCGC AGCGCCCACG GCGCCAGCAA CGTCCGAGGT
  TGCAGGAAGG GTGAAGGGCC CTGGGCGTCA CTCGTGACGT CTTCTAAGCC TCTTGGAGCG
  GCAACTAAAT GCGGGTTGGC AAGGTGGAGG TGGCGGTGGC GGTGGCGGTG GCGGGCCACC
  TGCAAGAAGC CTCCTGCAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51444644	NES14435667	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39268004					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51444644	NES14435667	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26387796 () rs orientation: forward

Symbol	Name	Function Class
A830092H15Rik	RIKEN cDNA A830092H15 gene	260 bp downstream
Cpgi13015	CpG island 13015	1513 bp distal
Cpgi13016	CpG island 13016	within coordinates
Nlgn1	neuroligin 1	1187 bp upstream
Rr77454	regulatory region 77454	within coordinates
Tssr32831	transcription start site region 32831	1827 bp upstream
Tssr32832	transcription start site region 32832	1798 bp upstream
Tssr32833	transcription start site region 32833	1746 bp upstream
Tssr32834	transcription start site region 32834	1730 bp upstream
Tssr32835	transcription start site region 32835	1704 bp upstream