rs39269313 SNP Detail

Summary

• ID
  rs39269313
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127724667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTAGAG CCACATGGTT
  TGTAGAAGTC AAGCAGAGAG AGATATTCTG TGTCAAAATG AGCCTGGCCT CTGCTTACAC
  AGGAAGGTAT AGGCACTGAG AATGTCAGGT TTCTATCATG TTCCTCTGAC CAGTATGGGT
  TTTCTGATAT CTCAATGCCC TTTGGCTCTC CCTGTCTTGC TGCCAAAGAA AACACCTCTG
  K
  CTGTTCAATA ACACAGATCT ATTCTCTTAA GCTCTTTGAC CCTGGACTCA GGGGGGAATA
  CATATTTGGT TCATTACATA GGCCCCATGG TCCAGTCCAA GGCTCATCTT GTGTCTCTGC
  ATCTTGCACT CTGGAACTAC AAACCAGGAC ATTGTGAGCA TAGTTTGAAG CTATTGCCAA
  CCTGCACTTG GACTGAGGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss50945987	NES14148148	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		T	G
ss323530335	CHEV_10_127325854	CHEVERUD	SCREENING_POP	f	SNP						T			G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs39269313					SNP	T	T	T	T	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50945987	NES14148148	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127724667 () rs orientation: forward

Symbol	Name	Function Class
Rdh7	retinol dehydrogenase 7	within coordinates
Rr226506	regulatory region 226506	1523 bp distal
Rr226507	regulatory region 226507	within coordinates
Rr226508	regulatory region 226508	735 bp proximal
Tssr99826	transcription start site region 99826	136 bp upstream
Tssr99827	transcription start site region 99827	48 bp upstream