rs39271349 SNP Detail

Summary

• ID
  rs39271349
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:18000705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCAAGAAT GTATATATAT
  TTTTTATTTT AGAAGAATAT TAACTAAATT CATCAATAAG AGAGTGACTT ACGGGTTCCA
  CATCTAAGTA TGTCCTATGC TCATCTTCAT TTGGATGTAA GCCTTCAATA GGTTCTGAAA
  CATCTGGACT TGCATGTAGG AAATGTGGAA GCGAAATATA CACAGGCTTT CCTGAAGACA
  S
  ATTTTAAAAG ACAATTGGAA ATGGATTATT TTATCACTCA TAAATTATTT AAAATATTTA
  CTAAAGTGTG AAGCTTTTGT AGATTAAGAT ATAGTTGTTT TTGAAATGCT GATAAAGCCA
  AGCTTGGTGG TGCATGCCTT TAATCCCAGC ATTAGGGAGG CAGAGGCAGG CAGATTTCTG
  AGTTCGAGGC CAGCCTGGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51687596	NES14753992	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39271349					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51687596	NES14753992	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:18000705 () rs orientation: forward

Symbol	Name	Function Class
Cd36	CD36 molecule	within coordinates
Tssr50146	transcription start site region 50146	232 bp upstream
Tssr50147	transcription start site region 50147	125 bp upstream
Tssr50148	transcription start site region 50148	99 bp upstream
Tssr50149	transcription start site region 50149	51 bp upstream
Tssr50150	transcription start site region 50150	25 bp upstream
Tssr50151	transcription start site region 50151	6 bp upstream
Tssr50152	transcription start site region 50152	1280 bp downstream
Tssr50153	transcription start site region 50153	1307 bp downstream
Tssr50154	transcription start site region 50154	1364 bp downstream