rs39271769 SNP Detail

Summary

• ID
  rs39271769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:62320324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGA GCAAGCCTGT AATCTCAGCA
  Y
  TTGCAAGGTA GAGGCAATTG GGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	LG/J	SM/J	WSB/EiJ
ss50718965	NES14253111	PERLEGEN	MM_PANEL2	f	SNP	C			T	T	C				C
ss136549530	ENSMUSSNP1971644	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				C
ss322982295	CHEV_9_62260849	CHEVERUD	SCREENING_POP	f	SNP								C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	LG/J	SM/J	WSB/EiJ
rs39271769					SNP	C	C	C	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50718965	NES14253111	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:62320324 () rs orientation: forward

Symbol	Name	Function Class
Gm40523	predicted gene, 40523	1295 bp downstream
Rr1154	regulatory region 1154	1607 bp upstream
Rr196313	regulatory region 196313	277 bp proximal
Rr196314	regulatory region 196314	877 bp proximal
Rr201157	regulatory region 201157	523 bp distal