rs39285016 SNP Detail

Summary

• ID
  rs39285016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:83106316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCAGAGGG CCATGTGTCA AGGTGGATTC TGTAGGAGTA
  AAAGGCAAGG CTTAAAGAGA TAAAATTCAT ACTGACTCTT TTCCTCAAAG TTATGGTTAA
  R
  TATGGACCTG TCATTCTGAT AAAGACTTGT GTGGAGAAAA CTTGAAAAAC TAGATCTGAA
  TTGTTTTTTT TTTTTTAAAA CATTCCTAAA GTCGTCAGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss51971133	NES14983051	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G		A	G	G	A
ss322735867	CHEV_8_84903586	CHEVERUD	SCREENING_POP	f	SNP									G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs39285016					SNP	G	G	G	G	G	G	A	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971133	NES14983051	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83106316 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Il15	interleukin 15			Intron
				Noncoding-Transcript-Variant
Tssr81957	transcription start site region 81957			622 bp upstream
Tssr81958	transcription start site region 81958			606 bp upstream
Tssr81959	transcription start site region 81959			393 bp downstream
Tssr81960	transcription start site region 81960			578 bp downstream
Tssr81961	transcription start site region 81961			614 bp downstream