rs39289111 SNP Detail

Summary

• ID
  rs39289111
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:75414315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAATCTATT TCTTTCCTGC CTGGTGATTT GCCACTGCAG
  TTACTTCCTG CCTTGTGACC ACACAGCCCT GCTTGACAAG GCTGCTCTGT AGATCTGAAG
  S
  ACTGGGGTTT CTGACCACAC AGCAGTGCTG CTGACACAGA GGACAGTTTC TCTACCAGGT
  AAACGTGTTT CTCGTCCCTT TGCTCGCTGG AAGTGTTTGG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51533191	NES14628260	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39289111					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533191	NES14628260	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75414315 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lcp1	lymphocyte cytosolic protein 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr369874	regulatory region 369874			1135 bp upstream
Rr404213	regulatory region 404213			within coordinates
Rr495436	regulatory region 495436			1470 bp distal
Tssr4478	transcription start site region 4478			1923 bp downstream
Tssr126621	transcription start site region 126621			1897 bp downstream
Tssr126622	transcription start site region 126622			1867 bp downstream
Tssr126623	transcription start site region 126623			270 bp downstream
Tssr126624	transcription start site region 126624			232 bp downstream
Tssr126625	transcription start site region 126625			78 bp downstream
Tssr126626	transcription start site region 126626			53 bp downstream
Tssr126627	transcription start site region 126627			within coordinates
Tssr126628	transcription start site region 126628			259 bp upstream
Tssr126629	transcription start site region 126629			934 bp upstream
Tssr126630	transcription start site region 126630			973 bp upstream
Tssr129769	transcription start site region 129769			272 bp upstream
Tssr129770	transcription start site region 129770			193 bp upstream
Tssr129771	transcription start site region 129771			1526 bp downstream