rs39292263 SNP Detail

Summary

• ID
  rs39292263
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70703334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAAAGAA TGTAGTTTCA
  GGGAAGAAAG GCAATAGAAG GAAGCCTGAG AATATCTTCA AAGGGTCAGA CTCAATTTAC
  TTTCTAAAGA AGTAGCTAGG AACTAGGGAA TAACTTAGAA ACAACAAGAT TGTATATATG
  TGCATCCTGG CCCCATTGTT CCTTATCTGT AGGGATAAGC GTGCTTTTTT GTGTGTCTGT
  M
  TATAACATAA CTGTTTACAC ATAATACACT GAAATGGAGC CCTTCCTTGT TACTTCATAC
  CATCCTCTGT GCTTCCTTCC TCAGGGGCTG ATGCTGCACC AACTGTATCC ATCTTCCCAC
  CATCCAGTGA GCAGTTAACA TCTGGAGGTG CCTCAGTCGT GTGCTTCTTG AACAACTTCT
  ACCCCAAAGA CATCAATGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51676653	NES14820449	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	C	A	C		C	C	A	C		A
ss321815802	CHEV_6_70676344	CHEVERUD	SCREENING_POP	f	SNP										C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39292263					SNP	A	A	C	A	A	A	C	A	C	C	C	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676653	NES14820449	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70703334 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	96 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	85 bp upstream
Rr158	regulatory region 158	399 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	915 bp downstream
Rr399685	regulatory region 399685	503 bp downstream
Rr399686	regulatory region 399686	161 bp upstream
Tssr1880	transcription start site region 1880	500 bp upstream
Tssr56956	transcription start site region 56956	517 bp downstream
Tssr56957	transcription start site region 56957	80 bp upstream
Tssr56958	transcription start site region 56958	127 bp upstream
Tssr56959	transcription start site region 56959	145 bp upstream
Tssr56960	transcription start site region 56960	168 bp upstream
Tssr56961	transcription start site region 56961	182 bp upstream
Tssr56962	transcription start site region 56962	190 bp upstream
Tssr56963	transcription start site region 56963	239 bp upstream
Tssr56964	transcription start site region 56964	254 bp upstream
Tssr56965	transcription start site region 56965	260 bp upstream
Tssr56966	transcription start site region 56966	271 bp upstream
Tssr56967	transcription start site region 56967	286 bp upstream
Tssr56968	transcription start site region 56968	310 bp upstream
Tssr56969	transcription start site region 56969	346 bp upstream
Tssr56970	transcription start site region 56970	359 bp upstream
Tssr56971	transcription start site region 56971	379 bp upstream
Tssr56972	transcription start site region 56972	405 bp upstream
Tssr56973	transcription start site region 56973	443 bp upstream
Tssr56974	transcription start site region 56974	475 bp upstream
Tssr56975	transcription start site region 56975	508 bp upstream
Tssr61321	transcription start site region 61321	132 bp downstream
Tssr61322	transcription start site region 61322	297 bp downstream
Tssr61323	transcription start site region 61323	312 bp downstream
Tssr61324	transcription start site region 61324	402 bp downstream
Tssr61325	transcription start site region 61325	468 bp downstream
Tssr61326	transcription start site region 61326	503 bp downstream
Tssr61327	transcription start site region 61327	517 bp downstream
Tssr61328	transcription start site region 61328	608 bp downstream