rs39294889 SNP Detail

Summary

• ID
  rs39294889
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:29231943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTTGTTT GACCCAACAA
  GGAGTATTTC CTTGGTTTAA AAATAATAAA TAAATTGCTA ACTTTCAGGA TTCCTCAAGT
  GGAGATAGTC TGGGAACATT TTCATTTGGT TGCAGCTGGC TTTTCTGATA ACAGTTTTCA
  ATGCAAAGCC TTAGTTCATA ATGGCATAAT GTCCTGCTTC TAATAATGCC TGTATGACGT
  M
  TGCTAGGTTC TTCTAAGAAT GCCTGCATGC TGTCTGTGAG GTTCATTCAC ATTGTAATTA
  CTCCTCTTGT GTACCTGCCT CTCTGGACAC TTCATAGTTT TTATTTTCTT CTGCACAGGG
  CTCTTACCAC TACATTTTTT GATAATCTTT TTGTCCCAAA TGAAAACTGA TATTTTATAC
  TACTGCTGTA ATTTGGATCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50753203	NES13566077	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39294889					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50753203	NES13566077	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:29231943 () rs orientation: forward

Symbol	Name	Function Class
Jak2	Janus kinase 2	within coordinates
Rr405910	regulatory region 405910	397 bp downstream
Rr546091	regulatory region 546091	within coordinates
Rr546092	regulatory region 546092	552 bp distal
Rr546093	regulatory region 546093	197 bp proximal
Rr546094	regulatory region 546094	1595 bp proximal
Tssr155787	transcription start site region 155787	1953 bp downstream