rs39295709 SNP Detail

Summary

• ID
  rs39295709
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97597528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTTGCCC ATGCTATTAA
  AAGAGGCACT GTTGTGCTGT ACGCTAGACA TTCAATAGGC ATGATGTGGC CACCAGTAGC
  CCCCAATTCC CCTAAGGGAA GTTAGGATTA CAGGGGACAG CAGAGTTAAG GAAGTCGGTT
  CAACTTGAGA TCATGTAAGA AAGGTGCTAG GCTAAGTGCG GGGCACCTAG AAGTTACCAC
  R
  TTCCGTTCAC TGTGTAGACT CAAAGACCTC TGGTGTGGTG GTAGAGACCA ACATACTACC
  AGGCTTGGCC CATAGGACTG GCCTGGCTCA AGAGTGGGTC TGTGAGGGGA GTTTGTTGGG
  TGCCAACAAT GTCCGGCAGG GCAGTGCCAC TCAATGGTGT GTGCTTTTAC AGTTGTCTGA
  GGAGCGTTGG CATTGGGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
ss50996642	NES13919754	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
rs39295709					SNP	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50996642	NES13919754	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97597528 () rs orientation: forward

Symbol	Name	Function Class
Gm66506	predicted gene, 66506	581 bp upstream
Mir7225	microRNA 7225	297 bp downstream
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	within coordinates
Tssr30803	transcription start site region 30803	617 bp upstream