rs39297314 SNP Detail

Summary

• ID
  rs39297314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:21464277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCC CAAGAGTCTT CAGAAGTATA
  Y
  GTTTAGGTCT CACAGTTGCC AAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50694718	NES13605143	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	C	T	C	T	T		C	C		T
ss146180704	ENSMUSSNP3318184	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss325751675	CHEV_19_21561403	CHEVERUD	SCREENING_POP	f	SNP												C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39297314					SNP	T	T	T	T	T	T	C	T	C	T	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50694718	NES13605143	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:21464277 () rs orientation: forward

Symbol	Name	Function Class
2010105D22Rik	RIKEN cDNA 2010105D22 gene	1019 bp upstream
Gm59126	predicted gene, 59126	within coordinates
Rr361557	regulatory region 361557	1180 bp proximal