rs39298747 SNP Detail

Summary

• ID
  rs39298747
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128814037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACCAAGTTA TGGGGTCTTT TCTTGCTCAA GTATCCAAAT
  TCCATATGGG AGTTCGAAAG ACTCAATTCA AGGAAAGGCA ATCCTTCTTG GAGTTGACAC
  Y
  CTGAGAAGGA GAACCAGAAG ATCACAAAAT AGTGAGGTGG TCTTAGCATA GTAAAGTCAG
  TTGGGAGGTG TTGGAGAAAC TGGCCCTCTA GTTTGGGAAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51843707	NES14705158	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39298747					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843707	NES14705158	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128814037 () rs orientation: forward

Symbol	Name	Function Class
4930553I04Rik	RIKEN cDNA 4930553I04 gene	944 bp upstream
Cpgi16665	CpG island 16665	571 bp distal
Gm71554	predicted gene, 71554	912 bp upstream
Piwil1	piwi-like RNA-mediated gene silencing 1	within coordinates
Tssr1644	transcription start site region 1644	812 bp downstream
Tssr48983	transcription start site region 48983	880 bp downstream
Tssr48984	transcription start site region 48984	841 bp downstream
Tssr48985	transcription start site region 48985	786 bp downstream
Tssr48986	transcription start site region 48986	726 bp downstream
Tssr53471	transcription start site region 53471	955 bp upstream