rs39300108 SNP Detail

Summary

• ID
  rs39300108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:114339854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATTGGGG GGGGGGGGGA
  GCGGGGGGGG GGCGGGGTGA GGCCTCCTGG GTTGTCCTGT TCTACAAAAT TTTTAAAAAT
  CAGTTTAACG CTTAAGTGAC ATAATAAAGG CTAAAGGGAT ATATAAACTG GGGAAGGACC
  CACTATTAAA TTTTAAAAGG AGCTTGTAAC CCTCTTTCAC ATCCCGAGAA ACATGGAGAT
  Y
  AGCAGTTGAA GCTACCTTCG GGATTCCTTG ATTGTGTACT ATTCTCCCTG CTGAGACGGC
  CCCCCGCCCC CCAGCACCCG CCGCCACACT CAGATCACCC CGAAATCCTG AAATTCAAGT
  CATGTGAATG TGAAGGAACG TCGTAGCTCA CACAGGCAAA CTGAGCATCC CAAAGCAATT
  CGACTGAGCC CTTATCCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52042474	NES15055438	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39300108					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52042474	NES15055438	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:114339854 () rs orientation: forward

Symbol	Name	Function Class
Rr198888	regulatory region 198888	254 bp distal
Rr207539	regulatory region 207539	1054 bp distal
Rr207540	regulatory region 207540	347 bp proximal
Rr368881	regulatory region 368881	625 bp downstream
Trim71	tripartite motif-containing 71	482 bp downstream
Tssr91842	transcription start site region 91842	1653 bp downstream