rs39300684 SNP Detail

Summary

• ID
  rs39300684
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69543113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTACAAG GTTATAGTAG
  TCTCTTTCCA TATAACAAGT CATTCAGAGC CAATTCAGGG AGTGTCGACT ACTCCATGGC
  GAAGGTCTTA AGCCCTTCAG GGATGAGTAG TGTTTCTCCA CCATATCCAT GTGCTTGGCC
  AATATTTGAA GAGTTTGTTC ATAGGAGGAT TCTGCTGACT AAGCTGTCTC TAAAAGTTGC
  M
  TCTTTGTATC CCCAAGTTCA CAGTGTCTGA CTTAGGAAGT GCTCTGTAAA TCCTATAACT
  TGGAATTCAA TTTGTCCTAA TAGTTAAGCG TGTATTTTTT TTTTAATATG GATAGGGTTT
  TTAAAAGGGA GTTGGTATAC TGCATTTAAA TATCATCTTT TACTATTTTT GCCACATTTT
  TAGTCAAATT TAAATATTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50565117	NES14071321	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39300684					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50565117	NES14071321	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69543113 () rs orientation: forward

Symbol	Name	Function Class
Atp6v1b2	ATPase, H+ transporting, lysosomal V1 subunit B2	within coordinates
Cpgi20406	CpG island 20406	1047 bp distal
Rr400869	regulatory region 400869	1674 bp downstream
Rr664484	regulatory region 664484	1805 bp distal
Rr664485	regulatory region 664485	749 bp distal
Rr664486	regulatory region 664486	390 bp proximal
Slc18a1	solute carrier family 18 (vesicular monoamine), member 1	1226 bp upstream
Tssr77656	transcription start site region 77656	1734 bp downstream
Tssr77657	transcription start site region 77657	1717 bp downstream
Tssr77658	transcription start site region 77658	1665 bp downstream
Tssr81518	transcription start site region 81518	1246 bp upstream