rs39310285 SNP Detail

Summary

• ID
  rs39310285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:66118868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCCACTTG GCTCTGCTCA ACAATTCCTT CCTTTTTGTG
  CTTTAGGAAT TTTTTTTTTT TCTAACAGGA AAAAAAAAAA AAAGACAGAG GAAGGAAATT
  Y
  GTCTGTAGGG CCAGAGAATT AAATGAGCTA ACCCATGAAA GCAGCTGCCA CAGACCTGCA
  CACAACAGCA TCTGTGACTG GGGACTGGGG ACTAGGGAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50723213	NES14247822	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	C	T	C	C	C	C	C	C
ss136573617	ENSMUSSNP1090285	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39310285					SNP	C	C	T	T	T	C	T	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50723213	NES14247822	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:66118868 () rs orientation: forward

Symbol	Name	Function Class
Dapk2	death-associated protein kinase 2	within coordinates
Rr401473	regulatory region 401473	543 bp upstream
Rr681677	regulatory region 681677	within coordinates
Rr681678	regulatory region 681678	596 bp proximal
Rr681679	regulatory region 681679	1118 bp proximal