rs39314317 SNP Detail

Summary

• ID
  rs39314317
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:43482743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTGCTT CCAGTCGACT
  TGGGTCACTT CAGCTGTGTC AGAGGAGAAG TGACACTGTA AGATGACAGA GCCACCTTCC
  TCTGCAGAGA TGTTCCTCTT TGTATCTATC GTGCCTGCTG TGGCTCCTAT GGGTGAGGGA
  AAAGCACACG TGAGTCTCTG GCCAGCAGCT GCCCTTCAAC CTTCCTGAAG AATCCCAGAG
  K
  GTTCAGAGTC CAGATCTGGC TCTAGGAACA GATGTCCACA GTCTGCAGTC TCTCCTGGTG
  CCCCCCATAG AGACCATCAT TGATTTCCAG AGTTTTTCTT CCTCTGCCTG TCACTCGAGG
  CCTGAAGCCC CAGCCATGGT CCCTTTCCCA TGGACTCTGT TCCCATCCTG CTCCCCATGG
  CTGCTTCTGA AGCTTGCTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51819004	NES14536961	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39314317					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51819004	NES14536961	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:43482743 () rs orientation: forward

Symbol	Name	Function Class
Rr404824	regulatory region 404824	588 bp downstream
Rr516192	regulatory region 516192	1756 bp proximal
Tigit	T cell immunoreceptor with Ig and ITIM domains	within coordinates
Tssr141140	transcription start site region 141140	819 bp downstream
Tssr141141	transcription start site region 141141	1724 bp downstream
Tssr141142	transcription start site region 141142	1752 bp downstream
Tssr141143	transcription start site region 141143	1765 bp downstream
Tssr141144	transcription start site region 141144	1980 bp downstream