rs39321239 SNP Detail

Summary

• ID
  rs39321239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129205421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGTTTAT TCTCTCACTC
  TTTCTTCCTT TCTCCCCCCC CCCCCCCGCC TTATATAAGC CCTAGGGATT GAATCTAGGA
  CCTTGTGAAT ACTAGGCAAG TATATGCTTA CTAGACCAGC ATAGTCCTGT ATCCCCAGAC
  CTTGTTTTAC CTTTTATATT CACTAAATTG CACAGGATGG CTTTGTGCTT TCTCTGTAGT
  Y
  AGGCAGTCCT TCAACAGCCA TTCTCCTGAC TCAGCTTCTC AGGTATGGAT AGCAGCCAGT
  GAACCAGGCT TCGCTTGCAA TCAATCTTTT TTTGTTTGTT TTGTTTTTTT CTGTTTTTGT
  TTTTTGTTTG TTTGTTTGTT TGTTTTCGAG ACAGGTTTTC TCTGTGTAGC CTTGACTGTC
  CTGGAACTCA CTTTGTAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss51418749	NES13704020	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs39321239					SNP	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51418749	NES13704020	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129205421 () rs orientation: forward

Symbol	Name	Function Class
Gm38906	predicted gene, 38906	695 bp downstream
Gm47861	predicted gene, 47861	within coordinates
Rr399972	regulatory region 399972	869 bp upstream
Tssr59119	transcription start site region 59119	918 bp upstream
Tssr59120	transcription start site region 59120	937 bp upstream
Tssr63549	transcription start site region 63549	629 bp downstream
Tssr63550	transcription start site region 63550	779 bp downstream
Tssr63551	transcription start site region 63551	1804 bp downstream