rs39327119 SNP Detail

Summary

• ID
  rs39327119
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60198022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATTGCAA CTTCCTTTGC
  AACCCACCCA GCAATTGGTC CTGTTTCCAT ACCAATGGGT ACTTCTAAAG TGCCTGCCAA
  AGGTCTGCTC GGGTTCGTAT CGCTCACTGG GAGCGTGTTT ATGCTTCCAG GTTGCTTAGC
  ATACAGTGGG ATAAAAATGG CCTTTGTTCC CAAGTAAAGT GCAGAGGCAG CTTAAAGACC
  R
  AGGCACATCC GGTTCCCAGA GCTCTCTGGA GGTGAACCGA TCCTATGACA AGAGATCCTA
  CCCATGTTTT GGCAGAGAGA AAGGTTCAAA TTGGGAAGGA AATGGGCTTA CGCTAGTTGT
  GGTTCCAAGG GCTCATCTGT TCCCAGCTAA ACTCCTGGAG TCAGCAGATG GACTGAAATA
  AAGCAAGCCC CCATGACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss50866512	NES14170952	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs39327119					SNP	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866512	NES14170952	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60198022 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Rr228092	regulatory region 228092	within coordinates
Tssr93624	transcription start site region 93624	1993 bp upstream
Vsir	V-set immunoregulatory receptor	within coordinates