rs39332253 SNP Detail

Summary

• ID
  rs39332253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72264507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTAGCAG TGGATCACCC
  CAGGGAATGG GAAGGAGGCA GCTTAAGTTT CTCATTCTTG CTAGCATCAG ACCTTACATA
  GCAAGAAGCA CCTCCAGAGT CTGAGCAATC TGCCAATTGC AGGCCATCAT CTCCCCAGTG
  ATCCCCAGTC CCCACATTGT TATATACGGG AGGTCACTGA CCATTGACCC TTCCTTGCTG
  Y
  CTAAACTACT TAGCATATTC GTACATCTTG CATTCTCTTC TCTGTGTCAG TGTCTCCAGG
  CTCCCTGACT TACGATTCTC CCTTGGCTTT TCATTTCCAG AGTATTTCAG TCCCAAACAG
  GTTCCTTCTC AGGCGATATA TTGTGGTGTA GTATGGGGGT GTTGTAAAAT GGATTTCTTC
  TCCAGTGCTG CTCCTGCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50743278	NES14241846	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39332253					SNP	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50743278	NES14241846	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72264507 () rs orientation: forward

Symbol	Name	Function Class
Gm37303	predicted gene, 37303	592 bp downstream
Gm37581	predicted gene, 37581	2 bp upstream
Tssr85980	transcription start site region 85980	549 bp upstream
Zfp280d	zinc finger protein 280D	within coordinates