rs39343200 SNP Detail

Summary

• ID
  rs39343200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68314617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGTGCTG CACACATGCA
  TGCATGCATC CACATAGCCA CATGGACATA GAGACACACA CACACATAAA AACAGAAATA
  GAAAATAAAA ACAGATCCTT AATTTTTTTT TTTTTCTGAA TTCACATGGC AACTCTTCTC
  TTACAAGCTG CCAGCCCTCA AATTCATCAT TTACATCTGG ATGCTTCAGC TTCCTGTGTG
  R
  CATGAAGATA GTAAAAGAAC CTATCTCTTA GGATTGCAAA TCAAGTGATA TATTTACATG
  TTTATACACA CACCCACCAC CTAGTACAAT GACTAGGTTG CTAGTAATTG GTAAACACAG
  TAGCTATTTT CCTTGTTTAG ATATTTCATC AAGGGAAAAT ATATACATTA ATACAAATAT
  ATCTTTCCTG TTAATATCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50975056	NES13920836	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39343200					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50975056	NES13920836	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68314617 () rs orientation: forward

Symbol	Name	Function Class
Gm10723	predicted gene 10723	499 bp upstream
Iqschfp	Iqcj and Schip1 fusion protein	within coordinates
Schip1	schwannomin interacting protein 1	within coordinates