rs39345994 SNP Detail

Summary

• ID
  rs39345994
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:83081997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTTTTTAC AAGATCCAGG AAGTGAATTC TTATTAGTCA
  AACCCAACTC AAACACATCA TAAATGATAC TTGTATCATT TATGGAATTT GGGAACTATG
  Y
  ATATTTATAA GCATGAATGC TGCAGCCCAG TGATGTCTAT TGGCTTGCCC CTAGTGAGTT
  ATCAAGTAAT CGAGCTTTAA AGCTGTTTAG CCCATAATC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51971186	NES14983405	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T		C		T	T	C		T
ss145303333	ENSMUSSNP387820	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T				C
ss322735760	CHEV_8_84879267	CHEVERUD	SCREENING_POP	f	SNP									T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39345994					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971186	NES14983405	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83081997 () rs orientation: forward

Symbol	Name	Function Class
Il15	interleukin 15	within coordinates
Tssr81943	transcription start site region 81943	1946 bp upstream
Tssr81944	transcription start site region 81944	1888 bp upstream
Tssr81945	transcription start site region 81945	1837 bp upstream
Tssr81946	transcription start site region 81946	1784 bp upstream
Tssr81947	transcription start site region 81947	1021 bp upstream
Tssr81948	transcription start site region 81948	797 bp downstream
Tssr81949	transcription start site region 81949	1646 bp downstream