rs39346746 SNP Detail

Summary

• ID
  rs39346746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:10980742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATGATTG TTCCCCTGAT
  TAGCTTTTAG AAGAGAATTT TGGCCAGAGA AAAGATCTGC AGTGTTGAGA TCTCCTATCA
  CACAGTCTGC TTTGCGGGGG GCTTCTGGAT AACTCACTAC TCTGGGAGGA TTTGTAAAAC
  ATTATGCTGG CTAAGACTTG TGATTCATGT GTACATGATC CTGTATGTAA GCTTAAGTCA
  Y
  TCAAGCCACA TCTGTACCAC TGTTTTTTTG TTTTTGTTTG TTTTTTTTTT TTCAGAAAAA
  TAGAAAGGCA GCAACCCTGA TAAAATGTTA ATGTCTCCAT GTGGAAGTCA GCCATACCTT
  TCCATGAGAT TTTTCCATTC CAGTTTATCA AAATGCAAAG GAAATAATAG GACAGAACAA
  GGCTGGAGCA AGGGTAGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51577126	NES14605700	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs39346746					SNP	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51577126	NES14605700	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:10980742 () rs orientation: forward

Symbol	Name	Function Class
Amacr	alpha-methylacyl-CoA racemase	1133 bp upstream
C1qtnf3	C1q and tumor necrosis factor related protein 3	506 bp downstream
Cpgi6946	CpG island 6946	685 bp proximal
Gm34315	predicted gene, 34315	within coordinates
Rr301970	regulatory region 301970	542 bp distal
Rr311562	regulatory region 311562	458 bp proximal
Tssr130700	transcription start site region 130700	1091 bp upstream
Tssr130701	transcription start site region 130701	1124 bp upstream