rs39351688 SNP Detail

Summary

• ID
  rs39351688
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131455353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACGGGGA CTATAGCCAA
  TAGGAACAAC TGATCCATAG ACGCCAGGAG TAGAGGCGGG GCTGACGAAA CTTAGAGGTG
  TGGCGAACAC TAGCTGCCTA GGCGCAGTCC TAGAGTGAGC TCCTCCCCGG CCTGTGGAAG
  CCTAAAGTAA AGCTGATGGG CGGGATAAAA TGGAAGCGAC AGCCAAACAC AAACTCTCAA
  R
  AGAAGACGGG ACCAATCGGA CCGGGAAAGG GAGGAGGGAA GTTCAGCCAA TAAATAGTAG
  AGAACGGCCT GGACCTTAGT GTATCCACCA ATAAGAAACT CGGGGTGTGT CTTCCAAGTT
  CACAGGGGGG AGGGTTTAAG CCGAGCAGAT GCTGGCCAAT GATCTTAGGG GCTGAGCTAA
  TATTAACCAA TCAGAGAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51368048	NES14475971	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39351688					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51368048	NES14475971	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131455353 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	within coordinates
Fam72a	family with sequence similarity 72, member A	288 bp upstream
Gm70877	predicted gene, 70877	within coordinates
Rr396286	regulatory region 396286	32 bp downstream
Rr396287	regulatory region 396287	within coordinates
Rr418129	regulatory region 418129	981 bp distal
Rr418130	regulatory region 418130	1366 bp distal
Rr418131	regulatory region 418131	279 bp distal
Rr418132	regulatory region 418132	within coordinates
Rr418133	regulatory region 418133	519 bp proximal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2	263 bp upstream
Tssr8629	transcription start site region 8629	243 bp upstream
Tssr8630	transcription start site region 8630	286 bp upstream
Tssr8631	transcription start site region 8631	365 bp upstream
Tssr8632	transcription start site region 8632	746 bp upstream
Tssr13596	transcription start site region 13596	1997 bp upstream
Tssr13597	transcription start site region 13597	1768 bp upstream
Tssr13598	transcription start site region 13598	1067 bp upstream
Tssr13599	transcription start site region 13599	1025 bp upstream
Tssr13600	transcription start site region 13600	870 bp upstream
Tssr13601	transcription start site region 13601	322 bp upstream
Tssr13602	transcription start site region 13602	230 bp upstream
Tssr13603	transcription start site region 13603	75 bp upstream