rs39355793 SNP Detail

Summary

• ID
  rs39355793
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:92089795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG AGCATTTATT TGGATTCAGC
  Y
  CACTGAAGAA GAATAAACAT CAACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50605121	NES14040963	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C	C	C	C	T	C		C	C	T		C
ss145570217	ENSMUSSNP3101219	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss322791505	CHEV_8_93887066	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs39355793					SNP	T	T	C	T	T	C	C	C	C	T	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605121	NES14040963	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:92089795 () rs orientation: forward

Symbol	Name	Function Class
Fto	FTO alpha-ketoglutarate dependent dioxygenase	within coordinates
Rr178622	regulatory region 178622	206 bp proximal
Rr191071	regulatory region 191071	1196 bp distal
Rr191072	regulatory region 191072	207 bp proximal
Tssr78731	transcription start site region 78731	94 bp upstream