rs39356218 SNP Detail

Summary

• ID
  rs39356218
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131566103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTCTGTA TCCACCTCTC
  ACACAGGGGA ATTAGAGACA TGCACCACCA TGCCTACCTT CCTTTACTTG ACTTTAAAGT
  CTGTTTCCTG TTTATTTGAA AGAGCAGGCA CACTTCCTGT AAGTGCCAAA AAACTGTATG
  CCCGTCTCAC AACTTCATTT GTTCCTCAGA ACTGCAGATG CCCTGTGTGA CTCCAGAAGC
  R
  GTTAGAAAGA TCAGGCGTGG TTATCTCCAT TTGCAGCTGA GGTGGCCAAG AGATAAGAGT
  TGCTTAAAGT CGGAGTTAGC AAACAACAAA ACGGGGTTTC CACACAGAGC TCAGCTTCGG
  AGCCCAACCC ATCCACTTAC TACAAGAAAA CGAAATTCTT GACATTTTGG GTTATATCCG
  GTAACTTCAA AGGTAAGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51366986	NES14473840	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A		G	G	A	G
ss145480061	ENSMUSSNP1944190	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39356218					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51366986	NES14473840	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131566103 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	within coordinates
Rr12195	regulatory region 12195	703 bp distal
Rr28482	regulatory region 28482	within coordinates
Rr366988	regulatory region 366988	within coordinates
Tssr8635	transcription start site region 8635	69 bp downstream
Tssr8636	transcription start site region 8636	27 bp downstream
Tssr8637	transcription start site region 8637	2 bp downstream
Tssr8638	transcription start site region 8638	23 bp upstream
Tssr8639	transcription start site region 8639	75 bp upstream
Tssr8640	transcription start site region 8640	120 bp upstream