rs39358387 SNP Detail

Summary

• ID
  rs39358387
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127585095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCGTTTGG ACACCTGGCT
  CATTTTAGTA AAAACATCTC TGCGTAGCTT CTCATCTGTG GTATTTGCAA CCAATCAGCC
  TTGTGCAAAA ACAAAGCCCG GTAGTCCTTC ACTGGTTTCA CAGGACACAG GGGTCAGTTA
  GGAGCAGCTT GTCCCGCGTG CGCAGCTGGG TTGTCAGTGC TGCGGTGTAC CTAACACACC
  R
  ACACAGACCC CTCTTTTTTC TCCCAGGAGA GGAGACAAGG CTCAGGAGTC CTGATCTAGC
  TGTGGCCACT GGAAGACTCT CAGGTGAGTG TGTGCATCTT GGTATCCAGC ACGCAAAGGG
  TTAAGCCTGG AGAGTTGGGG GGGGGGGGGT TGGAGGAATT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51618293	NES14659884	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	G	G	G	G	G	G	G	G	A	G
ss135871395	ENSMUSSNP81559	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39358387					SNP	A	A	A	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51618293	NES14659884	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127585095 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	1318 bp distal
Cpgi13801	CpG island 13801	497 bp distal
Gm56817	predicted gene, 56817	1189 bp upstream
Gm65225	predicted gene, 65225	within coordinates
Rr584860	regulatory region 584860	1524 bp distal
Rr584861	regulatory region 584861	1627 bp distal
Rr584862	regulatory region 584862	1200 bp distal
Rr584863	regulatory region 584863	632 bp distal
Rr584864	regulatory region 584864	within coordinates
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31599	transcription start site region 31599	1637 bp downstream
Tssr31600	transcription start site region 31600	1569 bp downstream
Tssr31601	transcription start site region 31601	1517 bp downstream
Tssr31602	transcription start site region 31602	1463 bp downstream
Tssr31603	transcription start site region 31603	1445 bp downstream
Tssr31604	transcription start site region 31604	1321 bp downstream
Tssr31605	transcription start site region 31605	807 bp downstream
Tssr31606	transcription start site region 31606	621 bp downstream
Tssr31607	transcription start site region 31607	397 bp downstream
Tssr31608	transcription start site region 31608	301 bp downstream
Tssr31609	transcription start site region 31609	262 bp downstream
Tssr31610	transcription start site region 31610	169 bp downstream
Tssr31611	transcription start site region 31611	56 bp downstream
Tssr35598	transcription start site region 35598	1688 bp upstream
Tssr35599	transcription start site region 35599	1606 bp upstream
Tssr35600	transcription start site region 35600	1578 bp upstream
Tssr35601	transcription start site region 35601	1545 bp upstream
Tssr35602	transcription start site region 35602	1228 bp upstream