rs39359731 SNP Detail

Summary

• ID
  rs39359731
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113282345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGAGCAA GCAGGGTTGA
  TCAGAGCGAG CAGAGGTCCT AAAATTCAAT TTCCAACAAC CACATGAAGG TTCAGGTGTA
  CAGCTACTGT GTACTCATCT GTACAGCTAC AGTGTACTCA CATACATAAA ATAAATAAAT
  AAATCTTTAA GAAAACTTGT TATACATACT TGAACACTTT TTTCCTCAGG ACAGACCCAT
  M
  GCTTTCATGA GATTTTCTAA AAGGTTCTTC ACCCCAAAAG AGCTAGCTTT AAGACAACTG
  TGAGGTCCTA GTGGTACAAG CCTGTAATCA CAAGTTCAAG GCCAGTGTAG GCAACTTATC
  TGGACTTTGT CATTAAAAAA AAAAGTTTTG TTTTGTTTTT TAATAAAAAA GAAACGGCTG
  TTGTGATATA TCCCTGTCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51842532	NES14762357	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39359731					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51842532	NES14762357	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113282345 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	1753 bp upstream
Cpgi17838	CpG island 17838	932 bp proximal
Cpne9	copine family member IX	within coordinates
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	241 bp downstream
Gm67816	predicted gene, 67816	237 bp downstream
Rr399829	regulatory region 399829	988 bp upstream
Rr636483	regulatory region 636483	151 bp proximal
Rr636484	regulatory region 636484	1263 bp proximal
Tssr58189	transcription start site region 58189	1566 bp upstream
Tssr58190	transcription start site region 58190	1776 bp upstream
Tssr58191	transcription start site region 58191	1855 bp upstream