rs39362645 SNP Detail

Summary

• ID
  rs39362645
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:188738458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCAGTTC CCAGCATCCA
  TGTCAGGTGG CTCTCAACAA AACTTACCAC ACCTGTAATC CCCGCTCTAA GGGACCCTTT
  CTTTGGCCTC CACCTGCACT CACACATACA AGTAAGACAG ACCAATCTTT TCTAAAGTGA
  CAATATAACT TAGTTGTTTG TCATAAAGCT ATATTCTCTT GAATGCCTGG AAGGAAATAT
  R
  TGAGCCATCC ACAGAGAAAC CAGGGTTAAG GTTTGCCACG AGCACCATTC TGCTTCTCTG
  TAGTAACACT GCCCACGCCT TTTGTGGACT ATTTCACTTT CACATACCAG GTCACTTGCA
  ATAGGTTCCT GTAATCGTAG GTGGGCAGGG AAGACACACT ATTTACACTA GATGAGGTCA
  TTTGCACAGG ACCTAGTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51419776	NES14449033	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39362645					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51419776	NES14449033	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188738458 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1193	CpG island 1193	704 bp proximal
Kctd3	potassium channel tetramerisation domain containing 3	within coordinates
Rr372619	regulatory region 372619	within coordinates
Rr425737	regulatory region 425737	within coordinates
Rr425738	regulatory region 425738	644 bp proximal
Rr425739	regulatory region 425739	1569 bp proximal
Tssr15707	transcription start site region 15707	1568 bp downstream
Tssr15708	transcription start site region 15708	1595 bp downstream
Tssr15709	transcription start site region 15709	1633 bp downstream