rs39370014 SNP Detail

Summary

• ID
  rs39370014
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:18002846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTCTACC ATGCACAATT
  CTTTGTGTCA AAGCTCATTC AATATTCTCT CTGATCCACA GCTACCCTTA TGTGACAAAG
  CACTGTTCTC AGTTATTTTA TACATAGGGT AATGATTCTG GGGTGTGTAA TCAATAAATC
  TGTCTATAGT CTCCTTTTCA GAGATAAGAC TGTAGGTCAA GAGTAATTGT ATGGACTTCC
  K
  TACTCATGGT TATACTCAGC CCCACCAGTT CAAAAACTTT GCTGTGTGAA TCATTAACAT
  AGTTCTGAAA TAAATGTGTC ATCTTCTTTA GACATCTTCA GAAAGAAAAG ATCCCCTTTA
  CACTTGATTT CTATATCTTG AAACTTTATC AGCAAACAGG ATAAATATTA CTCCAAGAAA
  ATGGCTTGTA CTATAAATGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51687545	NES14753967	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39370014					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51687545	NES14753967	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:18002846 () rs orientation: forward

Symbol	Name	Function Class
Cd36	CD36 molecule	within coordinates
Tssr50152	transcription start site region 50152	848 bp upstream
Tssr50153	transcription start site region 50153	780 bp upstream
Tssr50154	transcription start site region 50154	653 bp upstream