rs39370083 SNP Detail

Summary

• ID
  rs39370083
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165155498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATGACGG TTCGTGGCCC
  AGCTGGAGAA AGTTTATGTC TACCTCAGTG TCTGGTTCAG TCATTTCTTC TGGCAGGATA
  TTTAGGTCAT AGAAAATAAC AGGAATAGTT AAGCTACCTG CTAATTAGCC CAAAAGTAAA
  CTGCTTTTAA TGAAAAGCAG CTGGCATAGC AAATACACTA AAAGCACCAA CAGAGAGGGC
  M
  TGTGCTTGAG ATGAGTGTGG CAGACTGTCA GATCTGCTCT GCCTTTCATC GGTCAGGCAG
  CTCTGCAGGG TCTGGAAGCC GCTTCCAGCT GTGGTCCAGA GCTAGAGCTC AAGGCTAGCA
  CTGAAGGTGA TGGATGAGAT ACAACATGGA CCTACAGTTC GGCCTTGGGA ACTCCACACT
  TTCTCTGCGG CATCGGTGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss51401432	NES14455689	PERLEGEN	MM_PANEL2	f	SNP	A	C	A		A	C
ss320086745	CHEV_1_167258060	CHEVERUD	SCREENING_POP	f	SNP				C			A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs39370083					SNP	A	C	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51401432	NES14455689	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165155498 () rs orientation: forward

Symbol	Name	Function Class
Dcaf6	DDB1 and CUL4 associated factor 6	1571 bp downstream
Gpr161	G protein-coupled receptor 161	1184 bp downstream
Rr20301	regulatory region 20301	103 bp proximal
Rr25485	regulatory region 25485	174 bp distal
Rr25486	regulatory region 25486	1633 bp proximal
Tssr14767	transcription start site region 14767	1883 bp downstream