rs39372530 SNP Detail

Summary

• ID
  rs39372530
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68790534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTCCGTGG CAAGCTAGCC AGTGTAGCAC AATGGCGACT
  TCCTTCTTTT GACTGTAATA TGTAAGACCC AAATGCTTTG TCAGCCTCTT GCAGCCCAAG
  W
  CGTACACAGC CATGAAGTGG ATCGTTATTG GCATGCTGTT TCTAAAAGGG AAGCTGGACT
  CCGAGTTGAC TTATTAAGAT TTTTCTAGAA CATAGTTGTC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50732166	NES14251851	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39372530					SNP	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50732166	NES14251851	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68790534 () rs orientation: forward

Symbol	Name	Function Class
D9Mit158	DNA segment, Chr 9, Massachusetts Institute of Technology 158	984 bp distal
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682079	regulatory region 682079	669 bp distal
Rr682080	regulatory region 682080	441 bp proximal
Rr682081	regulatory region 682081	1187 bp proximal
Tssr85829	transcription start site region 85829	403 bp downstream