rs39374271 SNP Detail

Summary

• ID
  rs39374271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:114861427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACGGCTA CCCTCGAGCA
  AGTTACAGAT GAGGACTTCT CGAGGCTCCA GGAGATGATG GGTAGCCCAG GCTGATCTCA
  AACTTTCGGT AGTCGTTCTG CCTCAGCTTC TCCAAGCACT AGGAGGTTGC AGGTGTGAGC
  TAGTTACCGC ACCCGGCTCC ACCCAGCTTT TGAGATGGAA TGAGTTCTGG CTGACCTAAA
  Y
  ATCTGGTTTT GCACAGTCAT ACTGCGGAAT AGTGAGAACT AATGTTACAC TTTCTACAGC
  CACTGTGACA AAGTCCTACC AACTGGATGA CTTGAGGAAT AGCAATTAGC CTCTCTTGGG
  TCTGAAGGAC CCATAATCAG GTCTGAAGTC CATAATCAAG GTATTAGCAG GCACACAATC
  AGAAGTCTCT GGGGATGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51975805	NES14993962	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39374271					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51975805	NES14993962	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:114861427 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21082	CpG island 21082	995 bp distal
D8Mit139	DNA segment, Chr 8, Massachusetts Institute of Technology 139	264 bp proximal
Gm56821	predicted gene, 56821	1702 bp upstream
Nudt7	nudix hydrolase 7	within coordinates
Rr401147	regulatory region 401147	978 bp downstream
Rr670353	regulatory region 670353	1035 bp distal
Rr670354	regulatory region 670354	within coordinates
Tssr79531	transcription start site region 79531	1090 bp downstream
Tssr79532	transcription start site region 79532	1057 bp downstream
Tssr79533	transcription start site region 79533	1025 bp downstream