rs39376959 SNP Detail

Summary

• ID
  rs39376959
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58667664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTACTGA TTCACATTCT
  GAGATGTGAG CATGTGCCAA GTGATGCTAA GGAAATGGAG AAGGGTTTGA ATTTTGAGCC
  TCAGAATGGA ACCTGTAGTG CCTGGCAGAA GTTAGCTGTC ATTTCCTGTT CTTATGTGAT
  CTCTCTGAAA TAAATTCTAA TCACCTAGCA AGAGAGTGGA TGTTTTAGAA CAAACAAAGC
  M
  AGTTAGAAAG GCAGAGGGGA AAGGATAAAT ACATATATAC CAATTATCCT ATGTTGTGGC
  TTTTATAGTT TTGCGCCATT TAATAATGAA ACTGAAGGCT TAGCCTGAGG CTAATGGGAT
  GTACTGTTAA CTTTCGCTGA GACACCATTG CTGTCCCCAC CATTAAAATC AGGAACAGAA
  TTAGCTTTGA CTCAATTATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss50903981	NES13492643	PERLEGEN	MM_PANEL2	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs39376959					SNP	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50903981	NES13492643	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58667664 () rs orientation: forward

Symbol	Name	Function Class
Pnlip	pancreatic lipase	within coordinates
Tssr157281	transcription start site region 157281	292 bp upstream
Tssr157282	transcription start site region 157282	310 bp upstream
Tssr157283	transcription start site region 157283	512 bp upstream
Tssr157284	transcription start site region 157284	802 bp upstream
Tssr157285	transcription start site region 157285	1502 bp upstream
Tssr157286	transcription start site region 157286	1573 bp upstream
Tssr157287	transcription start site region 157287	1590 bp upstream