rs39380182 SNP Detail

Summary

• ID
  rs39380182
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87972506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTATAT TGGCCCAGAA
  AGTTACTGAC AGTAATATAA AGCCCTTCAA CAATTAAATC ATAACTCCAA AGACCCACAG
  GTTCACAGTT CTATTAAACC ATTATTTTAC CTTTTCACTG CCTATATCTG CTTACAGTTG
  GCCACAGCAT GAATCCCAAA GCCTCATCAA TGTCCTCCAT GTTCCCTCCA ATTCCAGTCA
  M
  AGAAGAGAAA TCCCTGAGAA CTTAATCCTG CTGGTGAGAT AAGAAAGACA GACCATTTTG
  TTGGTTAAGC CAGTTAAGAG TTTATAAATC ATCTATCTTT GGCTAGTGAT GAAGAGTGGG
  CTAATACTTC AAAGTATTGG TACCAAAGTT CAGGGACATA TTTTATTTTA CTTTAACTTA
  TTTTAATTTT ATTTTTACAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss51174242	NES13832867	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A		A	A	C		C
ss321600572	CHEV_5_88253672	CHEVERUD	SCREENING_POP	f	SNP									A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs39380182					SNP	A	A	A	A	A	A	A	A	A	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51174242	NES13832867	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87972506 () rs orientation: forward

Symbol	Name	Function Class
Csn1s2b	casein alpha s2-like B	226 bp downstream
Gm42794	predicted gene 42794	within coordinates
Prr27	proline rich 27	1050 bp upstream
Rr378252	regulatory region 378252	951 bp downstream
Tssr46931	transcription start site region 46931	1028 bp upstream
Tssr46932	transcription start site region 46932	1112 bp upstream