rs39382213 SNP Detail

Summary

• ID
  rs39382213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:31467281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGTGTTG CAACTGAAGG
  GATGAAGCAG TAGACATGGC TATTAACTAG ACTTTATCAA CATTTGTTCC TCTTCTCCCA
  GTAGGCGGGC TGCAGTTTCA AATCCCCATT TCTTTTGGCT TATAAGTTCC TTAAAAATTT
  GTTAATGTTT CCTAAAAACA TTGTATTAGC TAGAATTCAA AGCTACTTCT TTAATAATTA
  Y
  TCATTCTCAA GACATAAACT ATTTTAACAG CCATAGTATA AGAAAACAAA ACTGTCTCCT
  CTTTTTAAAA GGAGAAAGGC ATTGTGACAC ATGCCTTTAA TCCCAGCACT CTGGAGGAAG
  AGAGACAGAT CTCCAAGTTC AAGGAAAGCC TGCTCTACAG AGTGAGTTCC AGGACAGCCA
  GGACTATACA GGGAAACCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51630460	NES14594922	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	T	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39382213					SNP	T	C	C	C	T	C	T	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51630460	NES14594922	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:31467281 () rs orientation: forward

Symbol	Name	Function Class
Marchf6	membrane associated ring-CH-type finger 6	within coordinates
Tssr133930	transcription start site region 133930	772 bp downstream
Tssr133931	transcription start site region 133931	803 bp downstream
Tssr133932	transcription start site region 133932	836 bp downstream