rs39384607 SNP Detail

Summary

• ID
  rs39384607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64978788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAAAAGGG CTCCTCAGTG
  CCCCACAACA AGGATCTCCC CATCGCTGCA AGTCTCATGG TCCGGTCTCC TATTCCTGGG
  TGCTTTGCTG GTACAAGGTC CAGAGAGTCA CTTCTACAAG GAAAAACAGT TGTAGTTCAT
  AGCTGTCCAG AGACTGAGCC CGTCTGACCC AGAGAAGAAA GAGTGTGAGC CCAAGAGTAA
  Y
  CCCAGTCAAA GCCAGAGAAG CTCAGGAGGA GGAGTGTGCT GGGTGTGGTG GGCCACACCT
  TAATCCCAGT GCTGAGAAGG GAGGGGAGTT CCTGGTCAGC CAGAGCTACA CAGTGAGACT
  CTGTCTCAAA AACCAACCCA GCTCAGGTTT TATAGTTTGG CCTGCTTGGT GGCCTTCAGT
  GCTGGCTCCT CCTGAAGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51142128	NES13844255	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39384607					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51142128	NES13844255	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64978788 () rs orientation: forward

Symbol	Name	Function Class
Gm31684	predicted gene, 31684	1695 bp downstream
Klf3	Kruppel-like transcription factor 3 (basic)	within coordinates
Rr612115	regulatory region 612115	1569 bp distal
Tssr46420	transcription start site region 46420	486 bp downstream
Tssr46421	transcription start site region 46421	470 bp upstream
Tssr46422	transcription start site region 46422	633 bp upstream
Tssr46423	transcription start site region 46423	672 bp upstream
Tssr46424	transcription start site region 46424	775 bp upstream
Tssr46425	transcription start site region 46425	1539 bp upstream