rs39394482 SNP Detail

Summary

• ID
  rs39394482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:43389904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAAAATAT GGACTTGAAC
  AATCCATCCA AATTTTCTGT TTTAAATTCT CATCTATAAA ATATGGATAA TGATATTACC
  TCCATATTAA TATCAAGCTT GACTTAGAGA CTGAGTTTAA AGAAAGGACT GACCAGGATA
  TGTGATAGAG CTATTCAGAA TACAAAGTAT TATTACTTAG GGCTAGAAGA AAATTATACC
  Y
  ACAGCAAAGT TTATTCACAG CACTTCTTGA TTCTTTCTCT ACAATTCACA TAATCATGAA
  AGTTATTGCT TTGTTGTCTG GATATATTAA CTGGACGGCT GAGTGCACAA GGCCCACATC
  TGAATCAGTG CGAATATGAA ACGTGGAGGA GGGAAAATAG AAAGGGACTC TTGAGCTTCC
  ACCGGAGTCA TACTCATCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51293683	NES13781478	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39394482					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51293683	NES13781478	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:43389904 () rs orientation: forward

Symbol	Name	Function Class
Gm38800	predicted gene, 38800	within coordinates
Tpk1	thiamine pyrophosphokinase	within coordinates