rs39396592 SNP Detail

Summary

• ID
  rs39396592
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30171527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAACTGCT TACAGAGCCA
  AACACCCCTT CAGCATCCAG TTCTAGTCCG CTGAATGAGG CTCCTCCCTG CGCTGCCTTG
  CCCCTCCTAA TTCAAATGCG GCAGGAAGAG AATGCTGCGG TACCCAGGCA GGGCCACACC
  CATGGCCACA GCCAGAGTCC ACCCAACACA CAGCAGAGCA GGAATACCTA GACCTTAGTT
  R
  AAGCAGAACC TGTCCTGGGT CAGAGGAAAA TAGGCTCTCC TGAAACGGGG ACAGTGGAGT
  TCTGCAAAAA CAACCCTGGT ATTCTACAAC GGGGAGCCAT GACGGGGCTT TGGCAGGACA
  GTCTCTTATG CTCTCTGTGT AGGTCAAAAC CCTGACCTTG AGATTAAAGG CTAAGAAATT
  CCTCTTCTGA CTGTGGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51574680	NES14856880	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs39396592					SNP	G	G	G	G	G	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51574680	NES14856880	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30171527 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17248	CpG island 17248	1388 bp proximal
Mir96	microRNA 96	1977 bp upstream
Mir183	microRNA 183	1791 bp upstream
Mirc35	microRNA cluster 35, including Mir182 through Mir183	1791 bp distal
Mirc35hg	microRNA cluster 35, host gene	within coordinates
Mirc40	micro RNA cluster 40, including Mir96 through Mir183	1791 bp distal
Rncr4	retina expressed non-coding RNA 4	1365 bp upstream
Rr146072	regulatory region 146072	1126 bp distal
Rr146073	regulatory region 146073	within coordinates
Rr146074	regulatory region 146074	673 bp proximal
Tssr55327	transcription start site region 55327	1332 bp upstream