rs39397349 SNP Detail

Summary

• ID
  rs39397349
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4840303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGTATTT CAGTGGTTTG
  GTTATCCTAG TGTCTGAACC TCTGAGGCAA CTGCCTTTCT AATTTCAATG TGTCTAGCAT
  TGTGCCTGTG TGTGTGCCCT TGAGAACTGT CGATTGTAGA AACTCATGAA TACTTAATAT
  TATTAATCAA ACCTGGAATT TCCCAATGCT TGCATTTGGC CACCAGGGGG CAGTCTTGCC
  R
  ATTTGAAATG CCGATTTCGT TTTTGGGAGA CTCCAATTCT TCACCTTTGA GCATCTCAAA
  CGTTACTTCT TTTAGAACTT TTCACTTGAA AGTATTTCAA AGGTAACTCC TGCTGGCCGC
  TTGCCAGAGT TTGTCTAAGC AGAAGGCAAC GTTTCATTCT CAGTAGCTAC TCCATGCAGG
  TAGCCACAAG CCCACCAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss50908944	NES13484792	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs39397349					SNP	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50908944	NES13484792	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4840303 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	1051 bp upstream
Rr407421	regulatory region 407421	1410 bp distal
Rr407422	regulatory region 407422	1517 bp distal
Rr407423	regulatory region 407423	within coordinates
Rr407424	regulatory region 407424	4 bp distal
Tssr5799	transcription start site region 5799	1014 bp upstream