rs39401799 SNP Detail

Summary

• ID
  rs39401799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:68471505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTGGGCT CACTTGAGCA
  AAATATGATG CAGTCGCCCA ATAATGTGAA AATCTGGAGA CTGCCTGGGA CCTTTGATGG
  AGTTTGGATA GGGTTCAGGA GATCCTCTGA GAACTTAGGT GTCAAAAAAA TCAGACATGA
  AAAGAGAAGT TGTACTTTGC ATAAAAATGG AAGCTTCACA GAAACACTGT AAGCCGAGCG
  Y
  GACAGAATGT GAGTAAGTGG AAGAAGCCTG TGAAGACACC AGGCTTGTAT TAGAGGGACA
  GAATTTGAGG CACGAGGGGC CCCGAGGCCA AGCAGGGTCA CGACCCCAGT ATACCTGTGT
  CTATCCAGCC ATTTCCGTAG ATGCACTTGG TTTTGGTACG GTAGGCACAC TCTGTGCTGT
  GGTATACGCT TATGTTCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50460626	NES13443522	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39401799					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50460626	NES13443522	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:68471505 () rs orientation: forward

Symbol	Name	Function Class
A030001D16Rik	RIKEN cDNA A030001D16 gene	1938 bp upstream
Cpgi10187	CpG island 10187	828 bp distal
Mc5r	melanocortin 5 receptor	within coordinates
Rr393851	regulatory region 393851	1244 bp downstream
Tssr151786	transcription start site region 151786	917 bp downstream
Tssr151787	transcription start site region 151787	888 bp downstream
Tssr151788	transcription start site region 151788	1959 bp upstream