rs39406660 SNP Detail

Summary

• ID
  rs39406660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55239915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATGCGCA CCTTCCACAT
  GGATAGAAGG AAGAAGATAG GCTGAGTCAT GAGGCAACAG CCTCTGGTGT CTCACTAGGG
  GCCAGTAGGG CTGCCTGGTC CCATCACCCC ACACTCTCTG GCACTTTGAC TTGTCTTTTG
  ACTCACGCTC GGGGGACTTC AGGATATCTC TGTTTCTTTG CTTTGGAATC CTGGAAATAT
  Y
  CTGGCTTTCC TAGAAGGCTC ATCTCCAGAC ACAAACTTCT ACTCAGTCCA GATCTTATAG
  GCACAGCCTG AGCCGATATG GGTGACTTCC CCATTTCCTG AAGTGAAGGT GCACTTTCTC
  TGCCTTATTG TCTAGTCTAG CCTCTTCCTG TCTCAGACCC ATAGATTGGG GGGGGGGGGG
  GGGAGAAAAC TCCTATGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51221529	NES14297443	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs39406660					SNP	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51221529	NES14297443	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55239915 () rs orientation: forward

Symbol	Name	Function Class
Acsl5	acyl-CoA synthetase long-chain family member 5	383 bp upstream
Rr363563	regulatory region 363563	285 bp proximal
Rr363564	regulatory region 363564	1485 bp proximal
Tssr5558	transcription start site region 5558	351 bp upstream
Tssr157068	transcription start site region 157068	415 bp upstream
Tssr157069	transcription start site region 157069	442 bp upstream
Tssr157070	transcription start site region 157070	469 bp upstream