rs39411933 SNP Detail

Summary

• ID
  rs39411933
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143566400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGTGGAT AAGTGAATGC
  CAACTGTAAA AACAAAGTAA GTCCGTTTTC AAACTGGCTC ACATGGAACT ATAATTGGGA
  CTGATGTCAT AATTTGGCAA AATCTTGGAA AATGGGAATT ATTAGATGAT TTCTTCTTTA
  CATCAGTGCC AGAGATTCAA TCCAGGGCTC ACATGGGCTG AGCAAATGTT CTCCCACAGG
  R
  CTTTAGCTCT AACCTTTGAT TTGCTTTCTA AACCAGAAAG AAACACTTAC AGGATGGACA
  GGATTTTTTC TTCTTTTTGT CTTCACAAGA CAGCAACATA GTTATTAGTA TCTGCCAGCG
  ATATTTTATC ACGCTACTGT TACCATGTGG AAATTAATAC CTATCAAGGA AAGTGTTGCT
  CTTATCTCCC TTAAATACTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51659552	NES14643704	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	G	A	A	A	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39411933					SNP	G	A	A	A	A	G	A	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51659552	NES14643704	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143566400 () rs orientation: forward

Symbol	Name	Function Class
Gm33925	predicted gene, 33925	within coordinates
Gm40160	predicted gene, 40160	796 bp downstream
Rr79606	regulatory region 79606	1602 bp proximal