rs39413107 SNP Detail

Summary

• ID
  rs39413107
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:56924623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTTTAGA CACAGGGAAC
  AATTCTAAAC ATGCCATGCT CCTTACACCA CTTCATTCGT CCTGCTCTGT CCTCACCATA
  TGCAGGCACC TAAGATGGCC TTCCTTCTTC TCCCTGAAAA GCCATGGGTT CTCACACCCA
  TATTCCACCT CCGCTATTCC TGCTTTCTGC AAATGAATAC TGTCACTCAA CAGGTAAAGA
  R
  CAGGACCTTT CTCTGTATTC CCACCACATT AGCTCCCAAC ATGACTGTAT AGGTCCAGAC
  ATATTTCAAG GGCTGCTTCC ATGGCCAGTC TGAGGCAACA CGCATGGAAG GAGAAACCAT
  ATCTTACATA TTATGGGTGT TTCTTGTGGA CATCACCATT GCAGAGGGAC TATGGCAAGC
  ATTCACAAAA TATTTGTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51252420	NES14269369	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39413107					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51252420	NES14269369	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:56924623 () rs orientation: forward

Symbol	Name	Function Class
Gm51624	predicted gene, 51624	within coordinates
Satb2	special AT-rich sequence binding protein 2	within coordinates