rs39415584 SNP Detail

Summary

• ID
  rs39415584
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:65733858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGAAGG GTTGACAGTC
  TGTATTTGCA TCAGCACACC TGTTTTTATT GTTAGATTGC TTCTCCTCAG CACCCTGTGT
  TTGCTTTTGT TTAAGAAACA ATAAGAGAAA TTATAAATCA AAGCTATGTG CTGCAGACTC
  CGGAGACGGT GTCTCCAGAC AGTTAGCACA GTGGTGAGCT GTGGGGCGTC GGAGGAACTG
  R
  GTACGGATCT TATGTAACCT TCTAAAATAT TGGGATTGTG GGTGATCTTA AACCTTTTGA
  TATCTAAAAC TGCTTCCAAA TATGAAATCT GCTTCAAAAA GAATTTACAT AGGAAAAATT
  TGACAAAACT TTGATGATGA TGGATTTATG TAAACCTGCA AAGTAGAATT TTATGAATAC
  ATAGCATTTG CAAGCACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50963796	NES13941968	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39415584					SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50963796	NES13941968	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65733858 () rs orientation: forward

Symbol	Name	Function Class
Lekr1	leucine, glutamate and lysine rich 1	Intron
Rr577736	regulatory region 577736	1252 bp distal
Rr577737	regulatory region 577737	1575 bp proximal